1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catgtttatttctcgcggcatgaatacattgtgcaaagtattagtatacctttcgatagctttgatggtgaatttaatttttgtcttctgttctgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGAGCTGCAGTGATACACTATTGACACCTGACGGGGAAAATACCAATGCAA
species | Zea mays |
transcript | GRMZM5G807791_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
atacctttcgatagctttgatggtgaatttaatttttgtcttctgttctgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGAGCTGCAGTGATACACTATTGACACCTGACGGGGAAAATACCAATGCAA
atttaat putative branch site (score: 115)
tttttgtcttctgttc CT-rich tract
aatttaatttttgtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtttatttctcgcggcatgaatacattgtgcaaagtattagtatacctttcgatagctttgatggtgaatttaatttttgtcttctgttctgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGAGCTGCAGTGATACACTATTGACACCTGACGGGGAAAATACCAATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
catgttt
- - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg