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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaacatcagcaagtcagtaaacaagacaatccaagaaagatgaataccttgataaattattagttcaactacaaagtacacattacagtagtgca...

Basic information

species Zea mays
transcript GRMZM5G805725_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211414434|gb|FL217540.1|FL217540
EST:     ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|211021165|gb|FL217567.1|FL217567
EST:     GGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: GGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|33103906|gb|CF063866.1|CF063866
EST:     ATGGGGAAATACTTCTCGCGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGTCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|31405885|gb|CD484617.1|CD484617
EST:     ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGG-CTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|166619637|gb|EG042331.1|EG042331
EST:     ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGG
genomic: ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGG
EST: gi|211416981|gb|FL217550.1|FL217550
EST:     ACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTTTTCTTGGGGCGGAG
genomic: ACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|211026053|gb|FL217603.1|FL217603
EST:     TCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGANGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: TCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|211416983|gb|FL217552.1|FL217552
EST:     ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|211023600|gb|FL217588.1|FL217588
EST:     ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCG-CTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|211411888|gb|FL217529.1|FL217529
EST:     AAATACTTCTCACGCTTCTTTTCCCTCTCGGTTTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: AAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
EST: gi|211411880|gb|FL217521.1|FL217521
EST:     ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAG                         CTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG
genomic: ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaaca ... gagcatatacCTGGTGCTTGGTGAGGCGCCTGCGGATGGCGCGGGTCTTCTTGGGGCGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGGGAAATACTTCTCACGCTTCTTTTCCCTCTCGGTCTTCAAGGAGAGctgcacaacatcagcaagtcagtaaacaagacaatccaagaaagatgaataccttgataaattattagttcaactacaaagtacacattacagtagtgca

- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaga