Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggacccgagctcactgcggaatctcctttcggcatggaaataacacgtgagcttatcttctcgtttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTCGCAGCAACCAAAGATGCGCTCGGCGACGTCCTCGCCAAGCTAGCCTAGA

Basic information

species Zea mays
transcript GRMZM5G804323_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71443262|gb|DR824312.1|DR824312
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|15427355|gb|BI543177.1|BI543177
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|149008839|gb|EE041046.2|EE041046
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32921764|gb|CF026576.1|CF026576
EST:     AGCAGAGTCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|18650148|gb|BM498967.1|BM498967
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCCCCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|8551688|gb|BE128868.1|BE128868
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATACCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|5761870|gb|AI966843.1|AI966843
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACCAT                         CTTGACCATGCCGCAAAGATCAAGA-CACC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACC
EST: gi|12967890|gb|BG264837.1|BG264837
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32921283|gb|CF026095.1|CF026095
EST:     AGCAGAGTCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|148938699|gb|EC883030.2|EC883030
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|7136055|gb|AW498402.1|AW498402
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|15632642|gb|BI679735.1|BI679735
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32828621|gb|CD968299.1|CD968299
EST:     AGAAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|211336364|gb|FL380523.1|FL380523
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|149034772|gb|EE155072.2|EE155072
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTTTTCAGCACCATCGACGAT                         TTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTT
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|4688383|gb|AI637053.1|AI637053
EST:     AAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|211516905|gb|FL431699.1|FL431699
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|16925715|gb|BM078783.1|BM078783
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|12968275|gb|BG265221.1|BG265221
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|15590205|gb|BI674821.1|BI674821
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|28985109|gb|BQ539341.2|BQ539341
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|110202267|gb|EC884164.1|EC884164
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|211327704|gb|FL380460.1|FL380460
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCANAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32848621|gb|CD988302.1|CD988302
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCATCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32848571|gb|CD988252.1|CD988252
EST:     AGCAGAGCCTCAAGGGGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32849955|gb|CD989636.1|CD989636
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|15499623|gb|BI596136.1|BI596136
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|18181432|gb|BM382642.1|BM382642
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|28984872|gb|BQ539237.2|BQ539237
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGAAAAAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|211025253|gb|FL073322.1|FL073322
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGC
EST: gi|84969722|gb|DW468151.1|DW468151
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|18180724|gb|BM381934.1|BM381934
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|16927106|gb|BM080175.1|BM080175
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|14364915|gb|BG946726.1|BG946726
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|71321912|gb|DR797644.1|DR797644
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|18171152|gb|BM340992.1|BM340992
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|18180756|gb|BM381966.1|BM381966
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|4730591|gb|AI649757.1|AI649757
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|211022802|gb|FL073307.1|FL073307
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCACCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|211516907|gb|FL431701.1|FL431701
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|76017001|gb|DT944171.1|DT944171
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCCCCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|211022790|gb|FL073295.1|FL073295
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32830524|gb|CD970202.1|CD970202
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|13150082|gb|BG320404.1|BG320404
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
EST: gi|32848611|gb|CD988292.1|CD988292
EST:     AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGAT                         CTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC
genomic: AGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 34 (downstream exon)
Score: 37

CCTGCGCTACGACCTCAAGACCGTCATCGCTTCCAAGCCCAAGGAGGAGAAGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTCGCAGCAACCAAAGATGCGCTCGGCGACGTCCTCGCCAAGCTAGCCTAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1086

CCTGCGCTACGACCTCAAGACCGTCATCGCTTCCAAGCCCAAGGAGGAGAAGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTCGCAGCAACCAAAGATGCGCTCGGCGACGTCCTCGCCAAGCTAGCCTAGA


Block sizes: 46 (upstream exon), 48 (downstream exon)
Score: 11

CCTGCGCTACGACCTCAAGACCGTCATCGCTTCCAAGCCCAAGGAGGAGAAGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTCGCAGCAACCAAAGATGCGCTCGGCGACGTCCTCGCCAAGCTAGCCTAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 945

CCTGCGCTACGACCTCAAGACCGTCATCGCTTCCAAGCCCAAGGAGGAGAAGCAGAGCCTCAAGGAGCTCACCGGCAAGCTCTTCAGCACCATCGACGATgtaagtggac ... tttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTCGCAGCAACCAAAGATGCGCTCGGCGACGTCCTCGCCAAGCTAGCCTAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatctcctttcggcatggaaataacacgtgagcttatcttctcgtttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTCGCAGCAACCAAAGATGCGCTCGGCGACGTCCTCGCCAAGCTAGCCTAGA
                   aaataac  putative branch site (score: 945)
                                 cttatcttctcgtttt  putative PPT
                   aaataaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtggacccgagctcactgcggaatctcctttcggcatggaaataacacgtgagcttatcttctcgtttttggcagCTTGACCATGCCGCAAAGATCAAGAGCACCCCGGAGGCCGAGAAATACTTCGCAGCAACCAAAGATGCGCTCGGCGACGTCCTCGCCAAGCTAGCCTAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT