Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgtgcgttcgagcgttaattataccgcagtgtttaatgccttcgaacgttcacggatcgcattattcttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCAGTAAGCTAAAGCTAAACGTTCCACC

Basic information

species Zea mays
transcript GRMZM5G803981_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014774|gb|EE044466.2|EE044466
EST:     CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAG                         CCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC
genomic: CGCTTGGTCCTGTGGCCACCGAGCCCGCAGAAAGGTCTCCCGTGCCACAGgtacgtgtgc ... ttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgcagtgtttaatgccttcgaacgttcacggatcgcattattcttgtcggcagCCCCCGCCACTGTCCAGCGACGAGGAGACGGTGCTCCGGCTCGGCAACTACGTCCCGGTCTTCGTCATGCTCCCAGTAAGCTAAAGCTAAACGTTCCACC
        gtttaat  putative branch site (score: 4)
                                       ttattctt  putative PPT
                                      attattctt  TA-rich tract