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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ctgggtgggggaggatggatgatggatggtgggcgcgggaaacggaagctcagtcgtccgctgttaattaactgtgatacgatacgtacCGACGAGCACGGAGATGGCCTTCAGCGCCTTCTGCTTGTCCTTGTTGTCGTGCAGGTCCAGCTTCACCACGATTTTCTG

Basic information

species Zea mays
transcript GRMZM5G802002_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211151874|gb|FL298594.1|FL298594
EST:     GATCACCGTCATCTTGTGCGCCGCCATGTCCACCGACACGGSSMCGATGC                         CGACGAGCACGGAGATGGCCTTCAGCGCCTTCTGCTTGTCCTTGTTGTCGT
genomic: GATCACCGTCATCTTGTGCGCCGCCATGTCCACCGACACGGCGTCGATGCctgggtgggg ... cgatacgtacCGACGAGCACGGAGATGGCCTTCAGCGCCTTCTGCTTGTCCTTGTTGTCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgggaaacggaagctcagtcgtccgctgttaattaactgtgatacgatacgtacCGACGAGCACGGAGATGGCCTTCAGCGCCTTCTGCTTGTCCTTGTTGTCGTGCAGGTCCAGCTTCACCACGATTTTCTG
                               aattaac  putative branch site (score: 2)
                           tgttaattaa  TA-rich tract