1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagctaaaattgcgctcatgcaaatatgcaacatattggagccgttggtaactatagaacactagaactgtgaatcttataattctgtatgtatttgcagGAACCGAGTTTAATGTGGAGGATGAGGAGACACTTTCAAGCGTTGCTCAATGTATTGAGCATCTACGACAGAGTTCTTCATCCTCACAGGACAAAGAGAG
species | Zea mays |
transcript | GRMZM5G801423_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTCAAGACTCAGAGCCACCAACTCCTATGTCAGTCATGAAAATGGGCAA GAACCGAGTT-AATGTGGAGGATGAGGAGACACTTTCAAGCGTTGCTCAATEST: gi|71332076|gb|DR802943.1|DR802943
genomic: GTTCAAGACTCAGAGCCACCAACTCCTATGTCAGTCATGAAAATGGGCAAgtaagttttg ... gtatttgcagGAACCGAGTTTAATGTGGAGGATGAGGAGACACTTTCAAGCGTTGCTCAAT
EST: GTTCAAGACTCAGAGCCACCAACTCCTATGTCAGTCATGAAAATGGGCAA GAACCGAGTT-AATGTGGAGGATGAGGAGACACTTTCAAGCGTTGCTCAAT
genomic: GTTCAAGACTCAGAGCCACCAACTCCTATGTCAGTCATGAAAATGGGCAAgtaagttttg ... gtatttgcagGAACCGAGTTTAATGTGGAGGATGAGGAGACACTTTCAAGCGTTGCTCAAT
tggtaactatagaacactagaactgtgaatcttataattctgtatgtatttgcagGAACCGAGTTTAATGTGGAGGATGAGGAGACACTTTCAAGCGTTGCTCAATGTATTGAGCATCTACGACAGAGTTCTTCATCCTCACAGGACAAAGAGAG
tggtaac putative branch site (score: 59)
tgaatcttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagctaaaattgcgctcatgcaaatatgcaacatattggagccgttggtaactatagaacactagaactgtgaatcttataattctgtatgtatttgcagGAACCGAGTTTAATGTGGAGGATGAGGAGACACTTTCAAGCGTTGCTCAATGTATTGAGCATCTACGACAGAGTTCTTCATCCTCACAGGACAAAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - -tcatgca
- - - - - - - - - - - - - - caacata
- - - - - - - - - - - - - - - - - - - - gccgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaatc