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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctgagcttcttgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacgaattgctgccatttgcag

Basic information

species Zea mays
transcript GRMZM5G801409_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 5
GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctgagcttcttgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacga-attgctgccatttgcag---------------------------------------
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || || | ||| | ||||| ||| || |||||||||||| | |||   |  |     | || |||  ||  ||||    || || |   | |  ||  ||||||  | |  |||||  |  |||||                                         
GTCAGAATGGGTACCACCACCGCACTGAGATGAATAAGAAGGTTTACAAGATCGGCAAGTCTGGCCAGGAAAGCCATGCTGCCTGCACTGAATTTGACAGgtaccaattc---gtctaccagatat-tac--accagcactccatgattgcaaatctgtcttctgtttgatatgctattgcatctgtttgcgagcgaaacttaaacgatattgtgcttgctcttgcgctcag

upper sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 5
GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtac-tatttctgagcttcttgtac-atgtactaacttgcacaatctgt-ttacctttgttgctcttgtttgtaacg--aattgctgccatttgcag
|||||||||| ||||||||||| || ||| |||||||||||||||||||| | ||||| |||||| | ||  | |||  |||    || |||||||| |||||  | |||    | || | ||    || | ||| ||   ||    || ||   |||||   ||    |     |   | ||| |  |   | |||
GTCAGAATGGATACCACCACCGAACAGAGTTGAACAAGAAGGTTTACAAGCTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgtaagtgttttgttgattatggttttgtgcaataaatttagcaggaagtattttgtttgtaagtcaaactaacccctctacttgttttctgattcag

upper sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G36780.1 (Glycine max), 5'ss of exon 5
GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctgagcttcttgtacatgtactaacttgcacaatctgtttacctttgttgct--cttgtttgtaa--cgaattg--ctgccatttgcag----------
|||||||||| ||||||||||| |||||| |||||||||||||||||||| | ||||| |||||| | ||  | |||  |||    || |||||||| ||||  || |  ||  |||||||   |||   |         |||   |  ||    |    |   ||| ||||||  | ||||   |  | | |||             
GTCAGAATGGATACCACCACCGAACTGAGTTGAACAAGAAGGTTTACAAGCTTGGCAAAGCTGGAGATGAATCTCACTCTGCTCTTACTGAGTTTGATAGgt--tagtgttgt-cttcttgattatggttttgtgcagtaaattattgaacagcaggaagtactttggttgtaagtcaaattaaccctctacttgttttctgatccag

upper sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0072g00340.t01 (Vitis vinifera), 5'ss of exon 5
GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgta------ctattt-ctgagcttc--ttgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacgaattgctgccatttgcag-
|||||||||| |||||||| || ||||| |||||||||||| |||||||| | ||||||  ||  || ||| | |||   |||  ||| |||||||||||||        ||||| |||| |||        | | |  | |  |    ||    |||         ||||||      ||  |  | || |  |    |  
GTCAGAATGGATACCACCATCGTACTGAAATGAACAAGAAGATTTACAAGCTTGGCAAGATTGAGCAGGAGTCTCACACCGCCCTCACTGAGTTTGACAGgttagtaacttatttactgaactttggcaaggcctttgttgatgtcattaaaacatttgttaaaagagctcttagcctcaa--atctccttctgtccataaa

upper sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv12s0035g01020.t01 (Vitis vinifera), 5'ss of exon 4
GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgt--actatttctgagc---ttcttgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacgaattgctgccatttg-cag---
| |||||||| ||||| || ||||| ||||||||||||||| |||||||| | || ||| |||| |||||| ||||   ||||   || |||||||||||||     ||||     |   ||||| |  | |    ||  ||     |  ||   |||||  ||  |||   | |   |  |  |     ||   |||   
GGCAGAATGGTTACCATCATCGCACAGAGATGAACAAGAAGATTTACAAGGTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacattttcagtccttttcttttgaaagccaaaagctgttttttaagtgaccctttaatgaacttcgctttc-tgtttcccctttgttcatcagttt

upper sequence: GRMZM5G801409_T04 (Zea mays), 5'ss of exon 4
lower sequence: EDP06420 (Chlamydomonas reinhardtii), 5'ss of exon 5
-----------------------------------------------------------GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAA-GATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCAC-AGAGTTTGACAGgtact----atttctgagcttct------tgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacgaattgctgccatttgcag------------------------------
                                                           ||||| | || | |||||||||||||||||| |||||||||||       |  ||    | |||||  |  |      |     |     || || |  | | |  |    ||  ||| ||| |       | |   ||   | | |    |  | |  |  |          ||| |   |  |     |   ||  |||                                 
GGTGGCTTGCATTGGCGCGTGGCACCCTGCCCGCGTGAAGTGGACTGTGGCCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355124|gb|DN222097.1|DN222097
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|12970753|gb|BG267141.1|BG267141
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60400949|gb|DN233756.1|DN233756
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|211220301|gb|FL433492.1|FL433492
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|40334132|gb|CK368202.1|CK368202
EST:     GCTGGGCAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: GCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|4874485|gb|AI674005.1|AI674005
EST:     ATCGGCAAGGCTGGACAAGAGACCCNCGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|30031574|gb|CB833425.1|CB833425
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|78026104|gb|DV494491.1|DV494491
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|37373852|gb|CF623249.1|CF623249
EST:     CAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: CAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|78544727|gb|DV622225.1|DV622225
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|4886140|gb|AI677260.1|AI677260
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|67024495|gb|CO453244.1|CO453244
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|37374336|gb|CF623517.1|CF623517
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGTCTTCCCCCATTATGGTATCG
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGG-CTTCCCCCATTATGGTATCG
EST: gi|4837580|gb|AI670670.1|AI670670
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|22521165|gb|BU079976.1|BU079976
EST:     ATCGGCAAGGCTGGACAAGAGACCCCCGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCCTTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|116817251|gb|EC860068.1|EC860068
EST:     ATCGGCAATGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTCAAAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|33093512|gb|CF053506.1|CF053506
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60342167|gb|DN209140.1|DN209140
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|211255529|gb|FL453205.1|FL453205
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|67020359|gb|CO449108.1|CO449108
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|5058826|gb|AI737302.1|AI737302
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|67026849|gb|CO455598.1|CO455598
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|18170465|gb|BM340305.1|BM340305
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|33091710|gb|CF051704.1|CF051704
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60344423|gb|DN211396.1|DN211396
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|4804291|gb|AI666157.1|AI666157
EST:     ATCGGCAAGGCTGGACAAGAGACCCTCGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|148987188|gb|EE031020.2|EE031020
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60291863|gb|DN190102.1|DN190102
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|37389153|gb|CF631795.1|CF631795
EST:     GACAAGAGACCCACGATGCTTCCACAGAGTTNGACAG                         GACTGAGAAGGACATCACTCCCAT-GGTGGGCTTCCCCCATTATGGTATCG
genomic: GACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGT-GGCTTCCCCCATTATGGTATCG
EST: gi|19769837|gb|BQ034558.1|BQ034558
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60353991|gb|DN220964.1|DN220964
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|6637140|gb|AW261412.1|AW261412
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60401455|gb|DN234262.1|DN234262
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60345761|gb|DN212734.1|DN212734
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|12970316|gb|BG266922.1|BG266922
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|33101744|gb|CF061704.1|CF061704
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|60343025|gb|DN209998.1|DN209998
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGTTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|20336910|gb|BQ172540.1|BQ172540
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
EST: gi|78025402|gb|DV493789.1|DV493789
EST:     ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAG                         GACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT
genomic: ATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttc ... ccatttgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAGAATGGGTACCACCACCGCACTGAGATGAACAAGAAGGTTTACAAGATCGGCAAGGCTGGACAAGAGACCCACGATGCCTCCACAGAGTTTGACAGgtactatttctgagcttcttgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacgaattgctgccatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA