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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGGTGGCCACTGGACTCCACCATGGCTTGGCCTTGGCTCGGCCGGCTGGCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaaaatggtcatcacgtttattggctggtttaggtctttaggaataggatggatcgattcgtatacaaacagaaacgtaaaaacgtgattctg...

Basic information

species Zea mays
transcript GRMZM5G801278_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71433497|gb|DR814547.1|DR814547
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|211336029|gb|FL020959.1|FL020959
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|211336026|gb|FL020956.1|FL020956
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|74240730|gb|DT648644.1|DT648644
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|76909181|gb|DV163259.1|DV163259
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|211336028|gb|FL020958.1|FL020958
EST:     GCGGTTGCCGTTCTKCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|211336027|gb|FL020957.1|FL020957
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|71330264|gb|DR801884.1|DR801884
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|74243599|gb|DT651513.1|DT651513
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
EST: gi|211333872|gb|FL020955.1|FL020955
EST:     GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCC                         CTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT
genomic: GCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaa ... agcggcgtacCTCGTCGACCGGGCGGATCGCGCGTGGTTCTCGGCGAGGCGTCACGGGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGGTGGCCACTGGACTCCACCATGGCTTGGCCTTGGCTCGGCCGGCTGGCGGTTGCCGTTCTCCCAAGCGCCCAGGAGGACGAGATAGCGAGATGCCCctgaattgaaaatggtcatcacgtttattggctggtttaggtctttaggaataggatggatcgattcgtatacaaacagaaacgtaaaaacgtgattctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacagaa