1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgtgattgctaagttggtgtgccaaatcgcccctctgcttatgacaacgatacttgctgtagggacagagaccttatgttttctactgttctgttcacatattggctggcttgcagacctaatttcctgattctcttctatgtcatgttagGTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGACTGCAGCGAACTCAGGAGCTATACCATTCAAGCCCCAGTTCAATGTTCTC
species | Zea mays |
transcript | GRMZM2G702026_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACGGCCTCCTGCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTTG GTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGACEST: gi|5555329|gb|AI881280.1|AI881280
genomic: ACGGCCTCCTGCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTTGgtatgtgatt ... gtcatgttagGTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGAC
EST: ACGGCCTCCTTCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTTG GTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGACEST: gi|211531197|gb|FL317039.1|FL317039
genomic: ACGGCCTCCTGCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTTGgtatgtgatt ... gtcatgttagGTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGAC
EST: ACGGCCTCCTGCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTGG GGTTT-GGAAATCCCCAGCTAAGCCTGCC-AAGCTTTC-CATTCTCAGGA-EST: gi|211498503|gb|FL359837.1|FL359837
genomic: ACGGCCTCCTGCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTTGgtatgtgatt ... gtcatgttagGTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGAC
EST: ACGGCCTCCTGCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTTG GTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGAC
genomic: ACGGCCTCCTGCTTCACCTTCGATTGCTCCAGAACTTGCTCCAGTTTTTGgtatgtgatt ... gtcatgttagGTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGAC
acatattggctggcttgcagacctaatttcctgattctcttctatgtcatgttagGTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGACTGCAGCGAACTCAGGAGCTATACCATTCAAGCCCCAGTTCAATGTTCTC
tcctgat putative branch site (score: 111)
ttctcttctatgtc CT-rich tract
taattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgattgctaagttggtgtgccaaatcgcccctctgcttatgacaacgatacttgctgtagggacagagaccttatgttttctactgttctgttcacatattggctggcttgcagacctaatttcctgattctcttctatgtcatgttagGTTTTTGGAAGTCCCCAGCTGAGCCTGCCCAAGCTTTCTCATTCTCAGGACTGCAGCGAACTCAGGAGCTATACCATTCAAGCCCCAGTTCAATGTTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT