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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctgcctctgtaaaccgtttatttgatctcttacacctccctctctctgtttcaaatgcttatacctacatttcatcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGCCATCTGGGCCATGTGTTCAAGGGTGAAGGCTTCAAGACACCTACTGATG

Basic information

species Zea mays
transcript GRMZM2G577677_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33101372|gb|CF061332.1|CF061332
EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttacacctccctctctctgtttcaaatgcttatacctacatttcatcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGCCATCTGGGCCATGTGTTCAAGGGTGAAGGCTTCAAGACACCTACTGATG
 ctcttac  putative branch site (score: 3)
                                         tttcatc  putative PPT
                    tttcaaat  TA-rich tract