1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACCTCATGGGAGAGGATCTTGAAACGTTGAATCTCAAAGAGCTTCAGCAACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgatcatgtatattagactgcagtgcattccttatgtgttgcttactacaccactgacagccttgcgctctgcgcgttggagaaagctaacaagtaaatattcatcgtatgcgcag
species | Zea mays |
transcript | GRMZM2G553379_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGGTAAATTCGEST: gi|76011625|gb|DT938795.1|DT938795
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGGTAAATTCG
EST: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAG AACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGGTAAATTCG
genomic: AACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgat ... gtatgcgcagAACCAACTTATGCTCGAGTCAATTTCGGAGCTCCAACGGAAGGTAAATTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCTCATGGGAGAGGATCTTGAAACGTTGAATCTCAAAGAGCTTCAGCAACTAGAGCAGCAGCTGGAGAGTTCACTGAAACATATCAGAACCAGGAAGgtagtgtgatcatgtatattagactgcagtgcattccttatgtgttgcttactacaccactgacagccttgcgctctgcgcgttggagaaagctaacaagtaaatattcatcgtatgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA