1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTATAAATTTGATGATGAACGTGTAACAAAAGAAGATGCTAAGAAGGCTCTTGAAGAACAATATGGGGGTGATGAAGAGgtaagttctatttgtttttttttattcaaggataaattctgtgaagtctacctcatctacttatcaccatcgtctatgtttctcttttggattaaacag
species | Zea mays |
transcript | GRMZM2G551402_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACAATATGGGGGTGATGAAGAG TTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAGEST: gi|166611974|gb|EG102261.1|EG102261
genomic: GAACAATATGGGGGTGATGAAGAGgtaagttcta ... gattaaacagTTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAG
EST: AACAATATGGGGGTGATGAAGAG TTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAGEST: gi|166590083|gb|EG065582.1|EG065582
genomic: AACAATATGGGGGTGATGAAGAGgtaagttcta ... gattaaacagTTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAG
EST: TAAGAAGGCTC-TGAAGAACAATATGGGGGTGATGAAGAG TTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAGEST: gi|32937019|gb|CF041838.1|CF041838
genomic: TAAGAAGGCTCTTGAAGAACAATATGGGGGTGATGAAGAGgtaagttcta ... gattaaacagTTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAG
EST: AAGAAGATGCTAAGAAGGCTCTTGAAGAACAATATGGGGGTGATGAAGAG TTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAG
genomic: AAGAAGATGCTAAGAAGGCTCTTGAAGAACAATATGGGGGTGATGAAGAGgtaagttcta ... gattaaacagTTACCCCAAATAAACCCTGGTTTCAACAACGCTCCATTTAAATTCACGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAAATTTGATGATGAACGTGTAACAAAAGAAGATGCTAAGAAGGCTCTTGAAGAACAATATGGGGGTGATGAAGAGgtaagttctatttgtttttttttattcaaggataaattctgtgaagtctacctcatctacttatcaccatcgtctatgtttctcttttggattaaacag
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA