1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cccctaaatatgttgactgaaatatattataaatggatttgaggagggtatcaaatttgtaaaactgaactttctttgttctgattccccctcccattagGATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAATAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGA
species | Zea mays |
transcript | GRMZM2G524711_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGTTGGCATCAATTGGTAAGGGTCACTATGCTGCTGCATTTGATACAG GATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAAEST: gi|211472158|gb|FK973007.1|FK973007
genomic: GATGTTGGCATCAATTGGTAAGGGTCACTATGCTGCTGCATTTGATACAGgtatgggcat ... ctcccattagGATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAA
EST: GATGTTGGCATCAATTGGTAAGGGTCACTATGCTGCTGCATTTGATACAG GATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAA
genomic: GATGTTGGCATCAATTGGTAAGGGTCACTATGCTGCTGCATTTGATACAGgtatgggcat ... ctcccattagGATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAA
gggtatcaaatttgtaaaactgaactttctttgttctgattccccctcccattagGATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAATAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGA
ttctgat putative branch site (score: 198)
ctttctttgttctgat CT-rich tract
tcaaatttgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccctaaatatgttgactgaaatatattataaatggatttgaggagggtatcaaatttgtaaaactgaactttctttgttctgattccccctcccattagGATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAATAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGA
- - - - -atgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgaa