1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaatggcattcttatcccaccagcttgtcttgtgattgacactttgcatacatttacccacagtgatttgtccttttatctgatctactcattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG
species | Zea mays |
transcript | GRMZM2G481755_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|4646586|gb|AI491387.2|AI491387
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACNCAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|86473156|gb|DY239526.1|DY239526
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|211145063|gb|FL198583.1|FL198583
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|76293935|gb|DV033503.1|DV033503
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|13515952|gb|BG518228.1|BG518228
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|60355006|gb|DN221979.1|DN221979
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|16816798|gb|BM056039.1|BM056039
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATGGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|93283191|gb|EB675455.1|EB675455
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|148929470|gb|EC875572.2|EC875572
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|45847404|gb|CN071347.1|CN071347
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: AATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|148999994|gb|EE037082.2|EE037082
genomic: AATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|149002181|gb|EE038858.2|EE038858
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|110202350|gb|EC884247.1|EC884247
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: AAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTTGTTCAATCAGCATTGATGATEST: gi|149070161|gb|EE158564.2|EE158564
genomic: -AGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTC-TTTGTTCAATCAGCATTGATGAT
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTTTTTGTTCAATCAGCATTGATGATAEST: gi|86470375|gb|DY236745.1|DY236745
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|16746137|gb|BM032567.1|BM032567
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|86473085|gb|DY239455.1|DY239455
genomic: CCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|37375476|gb|CF624176.1|CF624176
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATTTCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|78092900|gb|DV521274.1|DV521274
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|22819291|gb|BU499381.1|BU499381
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: ACAGTCAG-GCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|40334619|gb|CK368689.1|CK368689
genomic: ACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|149069158|gb|EE157887.2|EE157887
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|87157193|gb|DY401982.1|DY401982
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: ATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|149103580|gb|EE288980.2|EE288980
genomic: ATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|148980799|gb|EE027355.2|EE027355
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|78026847|gb|DV495234.1|DV495234
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATTTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAEST: gi|91876038|gb|EB405995.1|EB405995
genomic: CAGGTTTCCTTCAATTGTTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
EST: TTGGGTACACAGACAGTCAGTGCCATCTGGCAT GGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
genomic: TTGGGTACACAGACAGTCAGTGCCATCTGGCATgtgagttatc ... cattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATA
tgcatacatttacccacagtgatttgtccttttatctgatctactcattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG
atctgat putative branch site (score: 598)
ctcattcc putative PPT
ttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatggcattcttatcccaccagcttgtcttgtgattgacactttgcatacatttacccacagtgatttgtccttttatctgatctactcattccacagGGACTATATCCTGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCACGAG
- - - gcattct
- - - - - - - - - caccagc
- - - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - - -tgcatac