1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttagggattagtttgtgctgaatctgaaaagaccggcagtgcaccccaaggtgctcgtaaaattgggtttgatttgaattctgacatctttgcaaatagTAGTATCCATAATGAGTCTGATGTAGCAGCAGTTGATGCCCCAATACCAGCTGAAACTTTACCTGATACTTCCCATGATATGAGCATGCCTGCTGTTCCT
species | Zea mays |
transcript | GRMZM2G479301_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cccaaggtgctcgtaaaattgggtttgatttgaattctgacatctttgcaaatagTAGTATCCATAATGAGTCTGATGTAGCAGCAGTTGATGCCCCAATACCAGCTGAAACTTTACCTGATACTTCCCATGATATGAGCATGCCTGCTGTTCCT
ttctgac putative branch site (score: 2)
catcttt CT-rich tract
atttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagggattagtttgtgctgaatctgaaaagaccggcagtgcaccccaaggtgctcgtaaaattgggtttgatttgaattctgacatctttgcaaatagTAGTATCCATAATGAGTCTGATGTAGCAGCAGTTGATGCCCCAATACCAGCTGAAACTTTACCTGATACTTCCCATGATATGAGCATGCCTGCTGTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - accggca
- - - - - - - - - - - - - - - - - - - -gtgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - ggtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac