1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgatgctctcgacaaacgtattagtttcttttgattccattgtattaatataataatagattaatatatgaaactaaacactaaactccttcacattcagGCCCAGACACGAATGGCAATCCCTGTTTCTGCTATTAGTTCCATTGCTAATGCTCGCTCACACGTGCCCCAGGACCAGGAGGATGATGAATTAACTGGCA
species | Zea mays |
transcript | GRMZM2G477829_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
taatataataatagattaatatatgaaactaaacactaaactccttcacattcagGCCCAGACACGAATGGCAATCCCTGTTTCTGCTATTAGTTCCATTGCTAATGCTCGCTCACACGTGCCCCAGGACCAGGAGGATGATGAATTAACTGGCA
cactaaa putative branch site (score: 2)
ctccttcac CT-rich tract
taataatagattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatgctctcgacaaacgtattagtttcttttgattccattgtattaatataataatagattaatatatgaaactaaacactaaactccttcacattcagGCCCAGACACGAATGGCAATCCCTGTTTCTGCTATTAGTTCCATTGCTAATGCTCGCTCACACGTGCCCCAGGACCAGGAGGATGATGAATTAACTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-gatgctc
- - - - -cgacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acactaa