1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagctgagctcgttcagttctcgtcgtcgtcgtcttgagaaatcgtgatgggacgacaaagagctgctgcccctcctttgtttggtgctttcagGTGGATCAGCTGCTGAAGATCTTCAGGCTGTGCGGGTCGCCGCCGGACGACTACTGGCGGAAGATGAAGCTGTCCCCGTCGTTCAAGCCCCCCAAGCCGT
species | Zea mays |
transcript | GRMZM2G477829_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGGCAGCGCCGAG GTGGATCAGCTGCTGAAGATCTTCAGGCTGTGCGGGTCGCCGCCGGACGACEST: gi|76931332|gb|DV172704.1|DV172704
genomic: CCGGCAGCGGCGAGgtgagctgag ... gtgctttcagGTGGATCAGCTGCTGAAGATCTTCAGGCTGTGCGGGTCGCCGCCGGACGAC
EST: TCCTCGCCGAGATGTTCTTCGGCAAGCCCCTCATGCCCGGCAGCGGCGAG GTGGATCAGCTGCTGAAGATCTTCAGGCTGTGCGGGTCGCCGCCGGACGAC
genomic: TCCTCGCCGAGATGTTCTTCGGCAAGCCCCTCATGCCCGGCAGCGGCGAGgtgagctgag ... gtgctttcagGTGGATCAGCTGCTGAAGATCTTCAGGCTGTGCGGGTCGCCGCCGGACGAC
aaatcgtgatgggacgacaaagagctgctgcccctcctttgtttggtgctttcagGTGGATCAGCTGCTGAAGATCTTCAGGCTGTGCGGGTCGCCGCCGGACGACTACTGGCGGAAGATGAAGCTGTCCCCGTCGTTCAAGCCCCCCAAGCCGT
tgctttc CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgagctcgttcagttctcgtcgtcgtcgtcttgagaaatcgtgatgggacgacaaagagctgctgcccctcctttgtttggtgctttcagGTGGATCAGCTGCTGAAGATCTTCAGGCTGTGCGGGTCGCCGCCGGACGACTACTGGCGGAAGATGAAGCTGTCCCCGTCGTTCAAGCCCCCCAAGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG