1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CAGACCTTCCTTTTTGTCTGTGAAAAAGACTGCTGGTTCCTTGGACAAGGAACTAGCTGCAAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaaggtttctgcaaatttgtttttcatgcatacatttatagattgttttctggcttagttctctgatgctttttttttttttgcaaactttcttacag
species | Zea mays |
transcript | GRMZM2G472991_T02 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AACTAGCTGCAAGTGGATATTCCAGGAAAGAGCAAGTGGAGATGGACAAG TACATTGAGGAAGATEST: gi|78077807|gb|DV506236.1|DV506236
genomic: AACTAGCTGCAAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaa ... tttcttacagTACATTGAGGAAGAT
EST: AACTAGCTGCAAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAG TACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGACEST: gi|60337135|gb|DN204108.1|DN204108
genomic: AACTAGCTGCAAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaa ... tttcttacagTACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGAC
EST: TACCAGGAAAGAGCAAGTGGAGATGGACAAG TACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGACEST: gi|78120951|gb|DV539335.1|DV539335
genomic: TACCAGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaa ... tttcttacagTACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGAC
EST: AGGAAAGAGCAAGTGGAGATGGACAAG TACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGACEST: gi|91056419|gb|EB166837.1|EB166837
genomic: AGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaa ... tttcttacagTACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGAC
EST: AACTAGCTGCAAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAG TACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGACEST: gi|74246122|gb|DT654036.1|DT654036
genomic: AACTAGCTGCAAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaa ... tttcttacagTACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGAC
EST: AAGAGCAAGTGGAGATGGACAAG TACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGACEST: gi|78077806|gb|DV506235.1|DV506235
genomic: AAGAGCAAGTGGAGATGGACAAGgtaggtcaaa ... tttcttacagTACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGAC
EST: AAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAG TACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGAC
genomic: AAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaa ... tttcttacagTACATTGAGGAAGATGCTGAAAGACATGATTCCAGCTCAGATGATGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGACCTTCCTTTTTGTCTGTGAAAAAGACTGCTGGTTCCTTGGACAAGGAACTAGCTGCAAGTGGATATACCAGGAAAGAGCAAGTGGAGATGGACAAGgtaggtcaaaggtttctgcaaatttgtttttcatgcatacatttatagattgttttctggcttagttctctgatgctttttttttttttgcaaactttcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA