1 5' 3' | 2 5' 3' | 3 5' 3' |
...attagaagaaggggaaaaggtgcaaacaccatccaagctaaaactaaaattggagctagaaaatagttcatgttattgcataagtaaattctgaaaaaagAAAATCAGATTTCTGGAAGCATGAGCTCGATATCAATTTGGCCAAGAGGCATGCCTCGCACTGGGAGCAGGCGGGCCATTTCGGCTCGAAATCAACAGGG
species | Zea mays |
transcript | GRMZM2G472209_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aaaattggagctagaaaatagttcatgttattgcataagtaaattctgaaaaaagAAAATCAGATTTCTGGAAGCATGAGCTCGATATCAATTTGGCCAAGAGGCATGCCTCGCACTGGGAGCAGGCGGGCCATTTCGGCTCGAAATCAACAGGG
aactaaa putative branch site (score: 2)
taaattctgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagaagaaggggaaaaggtgcaaacaccatccaagctaaaactaaaattggagctagaaaatagttcatgttattgcataagtaaattctgaaaaaagAAAATCAGATTTCTGGAAGCATGAGCTCGATATCAATTTGGCCAAGAGGCATGCCTCGCACTGGGAGCAGGCGGGCCATTTCGGCTCGAAATCAACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- -agaagaag
- - - - - - - - -aggtgca
- - - - - - - - - - - - - caccatc
- - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - tggagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgcat