1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAACTTGTGCTGACAGTGGGAAGGAAGCAATCACACTGCTGAAACCTCCTCACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGGgtgagattttatcccttttatctttggatactcatcatctcaccatactttagacattatctgtaattatattcagttgatacacagtacttgctcttgtcatcgatttatatttgtcttgttctcttttgtcatgcatttggcacattttgcag
species | Zea mays |
transcript | GRMZM2G471529_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGG ATTTGAAGCCACAAAAAGGATTAGAGTGATGGAAAGAGATCTAAATGAGCAEST: gi|12968691|gb|BG265637.1|BG265637
genomic: CACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGGgtgagatttt ... cattttgcagATTTGAAGCCACAAAAAGGATTAGAGTGATGGAAAGAGATCTAAATGAGCA
EST: CACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGG ATTTGAAGCCACAAAAAGGATTAGAGTGATGGAAAGAGATCTAAATGAGCAEST: gi|32840581|gb|CD980262.1|CD980262
genomic: CACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGGgtgagatttt ... cattttgcagATTTGAAGCCACAAAAAGGATTAGAGTGATGGAAAGAGATCTAAATGAGCA
EST: CACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGG ATTTGAAGCCACAAAAAGGATTAGAGTGATGGAAAGAGATCTAAATGAGCA
genomic: CACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGGgtgagatttt ... cattttgcagATTTGAAGCCACAAAAAGGATTAGAGTGATGGAAAGAGATCTAAATGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACTTGTGCTGACAGTGGGAAGGAAGCAATCACACTGCTGAAACCTCCTCACAATTTTGATGCTTGTTTCATGGACATACAGATGCCTGAAATGGATGGgtgagattttatcccttttatctttggatactcatcatctcaccatactttagacattatctgtaattatattcagttgatacacagtacttgctcttgtcatcgatttatatttgtcttgttctcttttgtcatgcatttggcacattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG