1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagttttctcgagcacgcaattcacatttggtcggtcgatgtcatcttctcaccaactggaatggatttgcattggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGTTCAGCCGCTGGATACTCGACCGTCCACTCTAATCTCCACTCGTACATT
species | Zea mays |
transcript | GRMZM2G471269_T04 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCGGGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|71762617|gb|DR960554.1|DR960554
genomic: CCGGGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|5108189|gb|AI739902.1|AI739902
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|37392581|gb|CF633542.1|CF633542
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACCACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|78027468|gb|DV495855.1|DV495855
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|78111058|gb|DV529455.1|DV529455
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|78120814|gb|DV539198.1|DV539198
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|148949256|gb|EC894699.2|EC894699
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|116827409|gb|EC871310.1|EC871310
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: G-TCACGATAAATTACTCAAAC-ACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|110533510|gb|EE037690.1|EE037690
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|116827243|gb|EC871126.1|EC871126
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: AATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|14203015|gb|BG836692.1|BG836692
genomic: AATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|78083939|gb|DV512332.1|DV512332
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTTGCCATGEST: gi|211272707|gb|FL458993.1|FL458993
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTTGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGARAGGTGTTTCGCCATGEST: gi|211231289|gb|FL464293.1|FL464293
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|16919289|gb|BM074120.1|BM074120
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|88750452|gb|DY534593.1|DY534593
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|116820117|gb|EC863309.1|EC863309
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: ACATGACGTTCGCGACGATC-AA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|111145649|gb|EE257973.1|EE257973
genomic: ACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|5069690|gb|AI737655.1|AI737655
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|8401242|gb|BE056876.1|BE056876
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|86468083|gb|DY234453.1|DY234453
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|71299116|gb|DR785562.1|DR785562
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|211175969|gb|FL481229.1|FL481229
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|74233921|gb|DT641835.1|DT641835
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|110516814|gb|EE021401.1|EE021401
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|78026574|gb|DV494961.1|DV494961
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|78125073|gb|DV543457.1|DV543457
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|148966524|gb|EE017546.2|EE017546
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCNAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|37397736|gb|CF636176.1|CF636176
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACTATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGEST: gi|40337181|gb|CK371251.1|CK371251
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACTATCAAA GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
ggtcggtcgatgtcatcttctcaccaactggaatggatttgcattggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGTTCAGCCGCTGGATACTCGACCGTCCACTCTAATCTCCACTCGTACATT
ttctcac putative branch site (score: 45)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttctcgagcacgcaattcacatttggtcggtcgatgtcatcttctcaccaactggaatggatttgcattggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATGTTCAGCCGCTGGATACTCGACCGTCCACTCTAATCTCCACTCGTACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA