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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttctcgagcacgcaattcacatttggtcggtcgatgtcatcttctcaccaactggaatggatttgcattggaattgcag

Basic information

species Zea mays
transcript GRMZM2G471269_T01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32852311|gb|CD991992.1|CD991992
EST:     CCGGGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: CCGGGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|71762617|gb|DR960554.1|DR960554
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|5108189|gb|AI739902.1|AI739902
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|37392581|gb|CF633542.1|CF633542
EST:     GTTCACGATAAATTACTCAAACCACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|78027468|gb|DV495855.1|DV495855
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|78111058|gb|DV529455.1|DV529455
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|78120814|gb|DV539198.1|DV539198
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|148949256|gb|EC894699.2|EC894699
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|116827409|gb|EC871310.1|EC871310
EST:     G-TCACGATAAATTACTCAAAC-ACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|110533510|gb|EE037690.1|EE037690
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|116827243|gb|EC871126.1|EC871126
EST:     AATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: AATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|14203015|gb|BG836692.1|BG836692
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|78083939|gb|DV512332.1|DV512332
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTTGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|211272707|gb|FL458993.1|FL458993
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTTGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGARAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|211231289|gb|FL464293.1|FL464293
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|16919289|gb|BM074120.1|BM074120
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|88750452|gb|DY534593.1|DY534593
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|116820117|gb|EC863309.1|EC863309
EST:     ACATGACGTTCGCGACGATC-AA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: ACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|111145649|gb|EE257973.1|EE257973
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|5069690|gb|AI737655.1|AI737655
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|8401242|gb|BE056876.1|BE056876
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|86468083|gb|DY234453.1|DY234453
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|71299116|gb|DR785562.1|DR785562
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|211175969|gb|FL481229.1|FL481229
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|74233921|gb|DT641835.1|DT641835
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|110516814|gb|EE021401.1|EE021401
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|78026574|gb|DV494961.1|DV494961
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|78125073|gb|DV543457.1|DV543457
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|148966524|gb|EE017546.2|EE017546
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCNAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|37397736|gb|CF636176.1|CF636176
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACTATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
EST: gi|40337181|gb|CK371251.1|CK371251
EST:     GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACTATCAAA                         GGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG
genomic: GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAAgtaagttttc ... ggaattgcagGGTGGCGGGCACACGGCGCCGGAGTACGAGCCGGAGAGGTGTTTCGCCATG