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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttttactgggttttctcatttattagttctatccatacgttcatatagagttcactgcggcaaacattgcagatccatttttttctctctagaagtgaccattggccacattttgtttagGCACACACTGTTCTTGAAATGACATATACTGAACAACAACTTACAGCAGCAATTGTTTCTCAAGGATTGCGTCCAGCACTTGCCCTTCCTGAATCTGGTG

Basic information

species Zea mays
transcript GRMZM2G469012_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G469012_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g36080.1 (Oryza sativa), 3'ss of exon 6
gtgtgttttactgggttttctcatttattagttctatccatacgttcatatagagttcactgcggcaaacattgcagatccatttttttctctctagaagtgaccattggccacattttgtttagGCACACACTGTTCTTGAAATGACATATACTGAACAACAACTTACAGCAGCAATTGTTTCTCAAGGATTGCGTCCAGCACTTGCCCTTCCTGAATCTGGTG
                     | | |||||| | ||    |||||  |||  |   |  |||  ||||||||   |||| || | ||||||    | || ||   | |       |||| | ||||||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
-------------------gccctgtattagctttaat--tacgtatataatgccattgctgaagcaaacatgtgagatacactattttct----acaattgggaactcattgatttttctctagGCACACACCGTTCTTGAAATGACTTACACCGAACAACAACTTACAGCAGCAATTGTTTCTCAAGGATTGCGCCCAGCTCTTGCCCTTCCTGAGTCTGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcagatccatttttttctctctagaagtgaccattggccacattttgtttagGCACACACTGTTCTTGAAATGACATATACTGAACAACAACTTACAGCAGCAATTGTTTCTCAAGGATTGCGTCCAGCACTTGCCCTTCCTGAATCTGGTG
                                             ttttgttt  CT-rich tract
           atttttttct  TA-rich tract