1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...agcacagttggtaaagcgtttttagtcagttgggatgctttgggagttgcatccagaaaggttcatatggcttgctgtctaatcacttttttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACAAGAAGAAAG
species | Zea mays |
transcript | GRMZM2G457381_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGACAATAATG ATGAGCTTGTGCCTGCTGACTYTACGCCGAAGCTGGACCTGCAAAGCGACAEST: gi|211286063|gb|FL280411.1|FL280411
genomic: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATGgtgcatgttc ... ttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACA
EST: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGACAATAATG ATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACAEST: gi|211286065|gb|FL280413.1|FL280413
genomic: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATGgtgcatgttc ... ttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACA
EST: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATG ATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACAEST: gi|31363681|gb|CD448038.1|CD448038
genomic: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATGgtgcatgttc ... ttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACA
EST: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATG ATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACAEST: gi|31355268|gb|CD439625.1|CD439625
genomic: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATGgtgcatgttc ... ttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACA
EST: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATG ATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACAEST: gi|31406179|gb|CD484911.1|CD484911
genomic: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATGgtgcatgttc ... ttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACA
EST: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATG ATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACA
genomic: AGCATCAGCTGAAGATGATGAAGATGGTTCTTCTGATGCTGAAAATAATGgtgcatgttc ... ttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACA
gttgcatccagaaaggttcatatggcttgctgtctaatcacttttttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACAAGAAGAAAG
gtctaat putative branch site (score: 63)
tctaatcacttttttc CT-rich tract
actttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcacagttggtaaagcgtttttagtcagttgggatgctttgggagttgcatccagaaaggttcatatggcttgctgtctaatcacttttttcccttcagATGAGCTTGTGCCTGCTGACTCTACGCCGAAGCTGGACCTGCAAAGCGACAAGAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - -tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtc