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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGAGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgtgtaaattagggtcaataataccatgattctgattctgccacccaattttcttatttctttattcttcctggaaaccctcctatttaatgtttaa...

Basic information

species Zea mays
transcript GRMZM2G452875_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452875_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g06190.1 (Oryza sativa), 5'ss of exon 4
GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGAGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgt------gtaaattagggtcaataa-taccatgattctgattct-----gc-cacccaattttcttatttctttattcttcctggaaaccctcctatttaatgtttaa---------------------------------------
||||||||||| || ||||||||||| ||||||||||| || || |||||||| ||||| |||||||||||||||||||||||||||| |       ||   ||     | ||| ||| |  | | |||||||     || |    ||||| | | |||||| ||||| | |  ||| |||| | ||| |||| | |                                       
GTAATGCATGGGGCTGATCGTGATATTATGTGGCTCCAACGGGATTTCCACATATATGTTTGCAATCTTTTTGACACAGGACAGgtattttgattaataggctaataatactaaatactaaaactgtgattcttgattgcacctttaatttacctctttcttcattctccttcaaaatcctcat-tttcatgtcttataaactgaaccttggattttcctttctaactccaaacag

upper sequence: GRMZM2G452875_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G54440.2 (Arabidopsis thaliana), 5'ss of exon 4
GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGAGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgtgtaaattagggtcaataataccatgattctgattctgccacccaattttcttatttctttattcttcctggaaaccctcctatt--taatgtttaa------
||||| ||||| || ||||| ||||| || ||||| || || |||||   ||| ||||| |||||||||||||||||||||||||| ||    | ||  ||| | |  |    |||   || |  |   ||       | | ||    | |  |||    ||| || |  |  |  ||||||  ||      
GTAATCCATGGAGCAGATCGAGATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGACAGgtttg----atttctggttattt-tgttttgaca-tggtcatattacttggaggtgt-atgagatcac-cttaacagaacccattttggtagtaatgtagaagaatga

upper sequence: GRMZM2G452875_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 4
GTAATGCATGGTGCGGATCGTGATATAATGTGGCTCCAGCGAGACTTCCACATCTATGTGTGCAATCTTTTTGACACAGGACAGgtatgtgtaaattagggtcaataataccatgattctgattctgccaccc-------aattttcttatttctttattcttcctggaaaccctcctatttaatgtttaa
||||||||||| || ||||| ||||| || ||||| || || ||||||  ||| ||||| |||||||| ||||||||||||||||| ||  |   ||   | | || ||    |  || |   | || ||          ||  |      | |  ||| | |     | ||| |  |  || |||     
GTAATGCATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAGgtttgattttgtttcag-cgatgatcttctatttttttctatgacatttcctgtaaaacataggagatccagtatccataacatacaccttt-tgctttatg-----