1 5' 3' | 2 5' 3' | 3 5' 3' |
...caagtggaacctagagctttgattgcatacggactaaagctgctgttggacctaagtttctaatacttactgatatggtgcttgcaaatcgaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACTGCAGCAAGGGCGTTGAAGACAGTATTGCAAGGAATTCTTCTGTCTTCCG
species | Zea mays |
transcript | GRMZM2G443265_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGTGGC GGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACTEST: gi|29577043|gb|CB617155.1|CB617155
genomic: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGCgtgagttatt ... gaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACT
EST: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGC GGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACTEST: gi|60344145|gb|DN211118.1|DN211118
genomic: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGCgtgagttatt ... gaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACT
EST: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGC GGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACTEST: gi|60348242|gb|DN215215.1|DN215215
genomic: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGCgtgagttatt ... gaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACT
EST: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGC GGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACTEST: gi|148966132|gb|EE017075.2|EE017075
genomic: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGCgtgagttatt ... gaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACT
EST: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGC GGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACT
genomic: CCTACCTCACCCTCGTGCCCGTCGTCACCGGAGTCATCATCGCCAGCGGCgtgagttatt ... gaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACT
ttggacctaagtttctaatacttactgatatggtgcttgcaaatcgaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACTGCAGCAAGGGCGTTGAAGACAGTATTGCAAGGAATTCTTCTGTCTTCCG
tttctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtggaacctagagctttgattgcatacggactaaagctgctgttggacctaagtttctaatacttactgatatggtgcttgcaaatcgaacttacagGGCGAGCCTAGCTTTCATCTGTTTGGATTCATCATGTGCATAGGAGCAACTGCAGCAAGGGCGTTGAAGACAGTATTGCAAGGAATTCTTCTGTCTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA