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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGCTCCATTGTTCTTGTACTTTATCCAATGGCTGGACTGCGGCTGCTGTTATGCCCTTCCCAGCTATTTAGGACTATTTCACATCCTCACATGCAAGgtaaaattgcagtatgtggttctgaaatttggaccttttatatacattttttctatacag

Basic information

species Zea mays
transcript GRMZM2G439168_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439168_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g17400.2 (Oryza sativa), 5'ss of exon 2
TCTGGCTCCATTGTTCTTGTACTTTATCCAATGGCTGGACTGCGGCTGCTGTTATGCCCTTCCCAGCTATTTAGGACTATTTCACATCCTCACATGCAAGgtaaaattgcagtatgtggttctgaaatttggaccttttatataca-ttttttctatacag---------------------------------------
 ||||| ||||| ||  | ||| | ||||| |||||||| || |||||||||||||| |||||||| ||| |||| || |||||||| ||||  |||||||||  | || ||||||    | || |  || |  |    |  ||   ||  ||  ||  |                                        
ACTGGCGCCATTCTTTCTTTACCTCATCCAGTGGCTGGATTGTGGCTGCTGTTATGCTCTTCCCAGTTATCTAGGCCTTTTTCACATTCTCATTTGCAAGgtaccactgaagtatggatgtatgtatctttgtacaagaaagtatggttgcttgcatttatgggcttgttcagctgtcatttttgtggctgcagctgtca