1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacacttagaaacgttaacatactgttctgagcttattttccattttaaaggacaataagattgcatgtgaatataaatatatattttttcattacacagGCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATTGGGGTAAATGAGGGCAAAGCTGGTGATTTCTGGTACCATGAGGATACTC
species | Zea mays |
transcript | GRMZM2G432566_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTGCTGCATCTGCAAGACCGTCTGCCCCTTCGTCTTCGTTACTAAG GCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATTEST: gi|91876387|gb|EB406344.1|EB406344
genomic: AGAAGTGCTGCATCTGCAAGACCGTCTGCCCCTTCGTCTTCGTTACTAAGgttcgtacct ... cattacacagGCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATT
EST: TGAAGTGCTGCATCTGCAAGACCGTCTGCCCCTTCGTCTTCGTTACTAAG GCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATTEST: gi|71433684|gb|DR814734.1|DR814734
genomic: AGAAGTGCTGCATCTGCAAGACCGTCTGCCCCTTCGTCTTCGTTACTAAGgttcgtacct ... cattacacagGCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATT
EST: AGAAGTGCTGCATCTGCAAGACCGTCTGCCCCTTCGTCTTCGTTACTAAG GCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATT
genomic: AGAAGTGCTGCATCTGCAAGACCGTCTGCCCCTTCGTCTTCGTTACTAAGgttcgtacct ... cattacacagGCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATT
ttaaaggacaataagattgcatgtgaatataaatatatattttttcattacacagGCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATTGGGGTAAATGAGGGCAAAGCTGGTGATTTCTGGTACCATGAGGATACTC
ttttttcatt CT-rich tract
aataagattgcatgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacttagaaacgttaacatactgttctgagcttattttccattttaaaggacaataagattgcatgtgaatataaatatatattttttcattacacagGCCATGGGTGAATACACTAGAGTGGTTGCTGATTTCTCAGTGTTCCCCATTGGGGTAAATGAGGGCAAAGCTGGTGATTTCTGGTACCATGAGGATACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt