1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcctgtgaatggtctgtctcgtttccctctcccatttattatttttcagaacaacatttttgcactgtctgactactgattggcaaagggctactcttagATCACGGGCGCCAAGGTCGTTGACCCCGACTCCGAGGCTGTCGCTGCCGCCGCCAGGCTTGCCAGCAGCGTGCGCGTGTCGTCCAGCGACGAGTTGTCGG
species | Zea mays |
transcript | GRMZM2G430463_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tcagaacaacatttttgcactgtctgactactgattggcaaagggctactcttagATCACGGGCGCCAAGGTCGTTGACCCCGACTCCGAGGCTGTCGCTGCCGCCGCCAGGCTTGCCAGCAGCGTGCGCGTGTCGTCCAGCGACGAGTTGTCGG
tactgat putative branch site (score: 2)
ctactctt putative PPT
aacattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctgtgaatggtctgtctcgtttccctctcccatttattatttttcagaacaacatttttgcactgtctgactactgattggcaaagggctactcttagATCACGGGCGCCAAGGTCGTTGACCCCGACTCCGAGGCTGTCGCTGCCGCCGCCAGGCTTGCCAGCAGCGTGCGCGTGTCGTCCAGCGACGAGTTGTCGG
- - gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg