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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGCAAGTATGGAGTCTGCCTTAAAACTGCTAGCATCAACTCCATATTGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGGCAGGTACTGAGgtgagttattaccttttggaacaacatattgtacatgtattctgttgctgcatgtcatgtgttgcaatgctattcacccttctggaatatttttgtgtag

Basic information

species Zea mays
transcript GRMZM2G421493_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421493_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 2
TCTGTGCAAGTATGGAGTCTGCCTTAAAACTGCTAGCATCAACTCCATATTGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGGCAGGTACTGAGgtgagttattaccttttggaacaacatattgtacatgtattctgttgctgc-atgtcatgtgttgcaatgctattcaccct--tctggaatatttttgtgtag
|||||| ||| ||| | ||||| ||  |||| ||| ||||||||||||| || ||||| ||||||||||| ||||||||||| || || || ||||| ||||||| | ||| ||||||  | | ||| | |||  |  ||| ||||| | |  | |  |      |||  ||||||||| |  |||| || ||||   |||||
TCTGTGGAAGCATGAACTCTGCATTGGAACTACTATCATCAACTCCATACTGTTTATCCATTGAGAAAGTTTTTGTTATAGGGGGTGGACAAGTACTAAGgtgagctgttaacttttgccaaagcatctagtatgtaaattgtgttgtttctgtatactccacctcaactctattcacctttatctgtaaaatttcactgtag

upper sequence: GRMZM2G421493_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 1
TCTGTGCAAGTATGGAGTCTGCCTTAAAACTGCTAGCATCAACTCCATATTGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGGCAGGTACTGAGgtgagttattaccttttggaacaacatattgtacatgtattctgttgctgcatgtcatgtgttgcaatgctattcacccttctggaatatttttgtgtag--
| |||| ||| |||  |||||| ||  ||||| ||||  |  |||| || |   | |||||||||||||| |||||||||||||| || ||| || | ||||     ||     |||  || |   | || | |||    ||  |     | | ||||||   ||  |  | ||     |    ||  |||||  ||||   
TATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGgta---catctttctttaaaatattttgttcttcatccgctccttc----cttttcatgttaagctct-ttctttgttatagctgataattttcatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211258521|gb|FL364870.1|FL364870
EST:     TGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGGCAGGTACTGAG                         AGAATATCTTAAAGGACCTGCATGTGAGGCTATCCATCTAACTGACATTCA
genomic: TGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGGCAGGTACTGAGgtgagttatt ... ttttgtgtagAGAATATCTTAAAGGACCTGCATGTGAGGCTATCCATCTAACTGACATTCA
EST: gi|211512072|gb|FL314332.1|FL314332
EST:     TGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGGCAGGTACTGAG                         AGAATATCTTAAAGGACCTGCATGTGAGGCTATCCATCTAACTGACATTCA
genomic: TGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGGCAGGTACTGAGgtgagttatt ... ttttgtgtagAGAATATCTTAAAGGACCTGCATGTGAGGCTATCCATCTAACTGACATTCA