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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAGGTTGTTTTGCAATGACAGAACTACATCATGgttaggttctccacttatatttatttattatccaataattggtgttgtctctattattttgcttagcactttatcaatgtacagtccagctacaatgtctcaatactgttgtgttctgtttattttgaatggcgcacagtagggcttgtacccagcacctaacgcactgttgtgttcttttcttgcaaatag

Basic information

species Zea mays
transcript GRMZM2G419782_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G419782_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g39220.2 (Oryza sativa), 5'ss of exon 1
GTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAGGTTGTTTTGCAATGACAGAACTACATCATGgttaggttctccacttatatttatttattatccaataattggtgttgtctctattattttgcttagcactttatcaatgtacag-tccagctacaatgtctcaatactgttgtgttctgtttattttgaatggcgcacagtagggcttgtacccagcacctaacgcactgttgtgttcttttcttgcaaatag
 | |||||||| |||||||||||||||||||||| || |||||| ||||| ||||||||||||||||| || |||||||| |||||||| || || ||||||||| |  |  |||| |||||| | | || | ||| |||       || ||  |   ||||||  |||||||||| |  | |  |||   | |||   ||| || |  |                                                                                   
ATAATAAATCTGGGAACCAAAAAGCACAGAGATAGGTTCTTTGACGGAATCGACAATTTGGATTATCCTGGCTGTTTTGCTATGACAGAGCTGCACCATGgttagttctt--acttctatttactcactaactaatcatta------tcactgcttggttgctttacactttatcagtccaaacctcctagttcaac--ctccatcccat-----------------------------------------------------------------------------------

upper sequence: GRMZM2G419782_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G31390.1 (Glycine max), 5'ss of exon 2
GTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAGGTTGTTTTGCAATGACAGAACTACATCATGgttaggttctccacttatatttatttattatccaataattggtgttgtctctattattttgcttagcactttatcaatgtacagtccagctacaatgtctcaatactgttgtgttctgtttattttgaatggcgcacagtagggcttgtacccagcacctaacgcactgttgtgttcttttcttgcaaatag
||  | ||| | || ||||| ||||| |  ||||||||||||||||| ||||| || ||||| || || ||||||||||| ||||| || || || ||||||       | ||  | | | |  || | |   || |  | |       | ||   |||   ||  ||  | ||   || || ||   | ||   |  || | |                                                                                        
GTTCTCAATTTGGGGACCAAGAAGCATAAGGATAAGTACTTTGATGGGATTGATAACTTGGACTACCCTGGTTGTTTTGCTATGACCGAGCTTCACCATGgta----ctttcatctctttcttcttctaacataacatgttgctcaacttgtaaactttgttttttcatctcattgttggactgtt-ggttagtgtcactgactt---------------------------------------------------------------------------------------

upper sequence: GRMZM2G419782_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv00s0662g00010.t01 (Vitis vinifera), 5'ss of exon 2
GTCATAAATCTAGGAACCAAAAAGCACAGAGATAAGTACTTTGATGGAATTGACAATTTGGATTATCCAGGTTGTTTTGCAATGACAGAACTACATCATGgttaggttctccacttatatttatttattatccaataattggtgttgtctctattattttgcttagcactttatcaatgtacagtccagctacaatgtctcaatactgttgtgttctgtttattttgaatggcgcacagtagggcttgtacccagcacctaacgcactgttgtgttcttttcttgcaaatag
||  | ||  ||||||| ||||| || |  |||||||||| |||||  |||||||||||||| |||||||| |||||||| ||||||||||| |||||||||  | |  ||  ||  |||  |   | | |    |  |||      | |  |  |||      ||   || || | | |   ||  |   | |   |||  |  |  | |                                                                                 
GTGCTCAACTTAGGAACTAAAAAACATAAGGATAAGTACTATGATGTTATTGACAATTTGGAGTATCCAGGCTGTTTTGCTATGACAGAACTGCATCATGgtaggttcatctgctggtatccagg-actttttgtttgttgac----ttttcaggattc-----agtgtttcattattttgtggttgaagcatatcatctataggc-atgg---------------------------------------------------------------------------------