1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtagtgcaattattgagttatatttgaagatagctattcgatatttttgtgtgtcaagaattgacattgtttttgacctacagcagATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACTTTAGCAGAAGTCAAGAAGCGCATACAGAGTAAACTGCAAGTCTCTGCTG
species | Zea mays |
transcript | GRMZM2G418232_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGATATTAATCAGACTCAG ATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACTEST: gi|76936264|gb|DV174663.1|DV174663
genomic: AAGATATTAATCAGACTCAGgtagtgcaat ... cctacagcagATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACT
EST: ATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAG CEST: gi|76936264|gb|DV174663.1|DV174663
genomic: ATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAGgtagtgcaat ... cctacagcag-
EST: ATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAG C
genomic: ATCGGCTAATTCATGTTTATCACTTCAAGAAAGATATTAATCAGACTCAGgtagtgcaat ... cctacagcag-
agctattcgatatttttgtgtgtcaagaattgacattgtttttgacctacagcagATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACTTTAGCAGAAGTCAAGAAGCGCATACAGAGTAAACTGCAAGTCTCTGCTG
ttttgac putative branch site (score: 30)
atatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgcaattattgagttatatttgaagatagctattcgatatttttgtgtgtcaagaattgacattgtttttgacctacagcagATTCAGAACTTTGGAGACCCTTTCGTTTTGGTCGTTCATGAAGGTGAGACTTTAGCAGAAGTCAAGAAGCGCATACAGAGTAAACTGCAAGTCTCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC