1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatgtaaatatgtaatacatgattatttgttcatcaacttcaactataacttgttgagggattttgggaaacaatgtgagcatatcttcgtttatttcagAATATGCACCACGGCTATCCCAAAGAAACACTGGTGCGTTTCCTTAAAGCTAGAGAGTGGAATGTAGCAAAGGCTCATAAAATG
species | Zea mays |
transcript | GRMZM2G417938_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ataacttgttgagggattttgggaaacaatgtgagcatatcttcgtttatttcagAATATGCACCACGGCTATCCCAAAGAAACACTGGTGCGTTTCCTTAAAGCTAGAGAGTGGAATGTAGCAAAGGCTCATAAAATG
ctataac putative branch site (score: 3)
tcttcgtttatttc putative PPT
tttatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtaaatatgtaatacatgattatttgttcatcaacttcaactataacttgttgagggattttgggaaacaatgtgagcatatcttcgtttatttcagAATATGCACCACGGCTATCCCAAAGAAACACTGGTGCGTTTCCTTAAAGCTAGAGAGTGGAATGTAGCAAAGGCTCATAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - -atatgta
- - - - - - - atacatg
- - - - - - - - - - - - - - gttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaat