1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAGCCCCGCAGCTCTCGCATCTCATCAGACGCCACCACCACCTCCGGCGACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCGgtacgttggttcaatcggcggcgcgcgcgtggaactcattctggatcgagcggttttggtttgatatatatgatcgatttcgctgggcgtctcgatcgggtgctcacgcttggttattttctcgctttggttgcag
species | Zea mays |
transcript | GRMZM2G416965_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCG GCAATGTCATCTCCTTCGGCCTCTTCCTCTCCCCAGTEST: gi|211351797|gb|FK980886.1|FK980886
genomic: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCGgtacgttggt ... ttggttgcagGCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGT
EST: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCG GCAATGTCATCTCCTTCGGCCTCTTCCTCTCCCCAGTEST: gi|149079042|gb|EE167926.2|EE167926
genomic: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCGgtacgttggt ... ttggttgcagGCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGT
EST: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCG GCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGTEST: gi|211351796|gb|FK980885.1|FK980885
genomic: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCGgtacgttggt ... ttggttgcagGCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGT
EST: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCG GCAATGTCATCTCCTTCGGCCTCTTCCTCTCCCCAGTEST: gi|211351798|gb|FK980887.1|FK980887
genomic: ACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCGgtacgttggt ... ttggttgcagGCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGT
EST: GATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCG GCAATGTCATCTCCTTCGGCCTCTTCCTCTCCCCAGT
genomic: GATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCGgtacgttggt ... ttggttgcagGCAATGTCATCTCCTTTGGCCTCTTCCTCTCCCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCCCCGCAGCTCTCGCATCTCATCAGACGCCACCACCACCTCCGGCGACCGAAGATGATCTCTCCGGATGCAGCCCGCAACGTCGTAGGCATCATCGgtacgttggttcaatcggcggcgcgcgcgtggaactcattctggatcgagcggttttggtttgatatatatgatcgatttcgctgggcgtctcgatcgggtgctcacgcttggttattttctcgctttggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG