Sequence
atgc intronic sequence ATGC exonic sequence...gaatgaatgacatatcttcgctgcttggtgtcgattgattatttttcctaatgaaaggcataaatgaattttgttcttaccactgttacattatttgtagGATGAAATACAAAGGGAGGCTCAAATAATGAGCTTGATAGATCATCCTAATGTAATCAGGGCTTACTGCTCATTTGTTGTAGAGCACAGCCTCTGGGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G413544_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g37480.1 (Oryza sativa), 3'ss of exon 1
gaatgaatgacatatcttcgc-tgcttggtgtcgattgattatttttcctaatgaaaggcataaatgaattttgttcttaccactgttacattatttgtagGATGAAATACAAAGGGAGGCTCAAATAATGAGCTTGATAGATCATCCTAATGTAATCAGGGCTTACTGCTCATTTGTTGTAGAGCACAGCCTCTGGGTGA
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gcatttatcatcactgttgatatgtctgactttcgtttctcatttccccttcctgaagctataaataaatttatttcttatagttgt-gcaccatttgtagGATGAAATCCAACGGGAGGCTCAAATCATGAGCTTGATAGAGCATCCTAATGTCATCAGGGCTTACTGCTCATTTGTTGTTGAGCACAGCCTTTGGGTAG
upper sequence: GRMZM2G413544_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0025g02480.t01 (Vitis vinifera), 3'ss of exon 1
-gaatgaatgacatatcttcgctgcttggtgtcgattgattatttttcctaatgaaaggcataaatgaattttgttcttaccactgttacattatt--tgtagGATGAAATACAAAGGGAGGCTCAAATAATGAGCTTGATAGATCATCCTAATGTAATCAGGGCTTACTGCTCATTTGTTGTAGAGCACAGCCTCTGGGTGA
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cagttggcagatgtgtcaat-ttatttgcagtgg--tgacaacctgttataaaagaaagaatgatcttaagtgatttacttgatggatgcatctctcttgtagGATGACATACGTAGGGAGGCTCAAACAATGAGTTTGATTGACCATCCAAATGTAATAAAGGCATACTGTTCATTTGTTGTTGAAAGAAATCTTTGGGTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctaatgaaaggcataaatgaattttgttcttaccactgttacattatttgtagGATGAAATACAAAGGGAGGCTCAAATAATGAGCTTGATAGATCATCCTAATGTAATCAGGGCTTACTGCTCATTTGTTGTAGAGCACAGCCTCTGGGTGA
ttcttac putative branch site (score: 2)
ataaatgaattttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaatgaatgacatatcttcgctgcttggtgtcgattgattatttttcctaatgaaaggcataaatgaattttgttcttaccactgttacattatttgtagGATGAAATACAAAGGGAGGCTCAAATAATGAGCTTGATAGATCATCCTAATGTAATCAGGGCTTACTGCTCATTTGTTGTAGAGCACAGCCTCTGGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA