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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGTTTTGATGAGCCGGTCATTGGCTCCATTCTAAAGGAAACTCTTAAGGCTCTGGAATACCTTCACCGGCAGGGTCAAATACATCGTGATGTTAAGgttagcattagtagaatatttttgggtagaaactgtagtcatttgatgtatctataagtcattgttgtttatttttgcttgattcggcactgtacag

Basic information

species Zea mays
transcript GRMZM2G413544_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G413544_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g37480.1 (Oryza sativa), 5'ss of exon 2
AGAAGGTTTTGATGAGCCGGTCATTGGCTCCATTCTAAAGGAAACTCTTAAGGCTCTGGAATACCTTCACCGGCAGGGTCAAATACATCGTGATGTTAAGgttagcattagtagaatatttttgggtagaaactgtagtcatttgatgtatctataagtcattgttgtttatttttgcttgattcggcactgtacag
 || ||||| || || || || |||||||| |||||||||||||| ||||||||| |||| ||||||||| |||| || ||||| ||||||||||| ||||||||| |  ||  ||||||              ||| |||| |||| |   | | | | | |    ||||| ||||||  ||  | ||||   |||
TGATGGTTTCGAGGAACCTGTTATTGGCTCTATTCTAAAGGAAACACTTAAGGCTTTGGAGTACCTTCACAGGCAAGGACAAATCCATCGTGATGTCAAGgttagcttctgtcaaatatt--------------gtaatcatctgatttga-tgttatttacttcaatttatctttgctcaatgtgacacttggcag