1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGGACCGCTACTGGAGGACAATCCAATTGTTCTTGGATCAATACGCTCCTGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaatgccttaatttattttttccccaaatttttgtcacttttatcgtgtttgcatctttttgcttttgagatggggctagtttatttttgaagt...
species | Zea mays |
transcript | GRMZM2G412888_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|30087676|gb|CB885882.1|CB885882
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|110540523|gb|EE044443.1|EE044443
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|37381733|gb|CF627768.1|CF627768
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|37382993|gb|CF628471.1|CF628471
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|71425139|gb|DR806558.1|DR806558
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|60338445|gb|DN205418.1|DN205418
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|110195540|gb|EC877437.1|EC877437
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|148977665|gb|EE026090.2|EE026090
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|71448310|gb|DR829360.1|DR829360
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|71427906|gb|DR808956.1|DR808956
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|78026668|gb|DV495055.1|DV495055
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|31997570|gb|CD661661.1|CD661661
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|5108468|gb|AI740181.1|AI740181
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|5607937|gb|AI901604.1|AI901604
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|211038059|gb|FL324598.1|FL324598
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATYTGGATCGGACTTTTTCCAAATTTCEST: gi|28986954|gb|CB351391.1|CB351391
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|71316273|gb|DR794813.1|DR794813
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|37374218|gb|CF623453.1|CF623453
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|30705914|gb|CD058968.1|CD058968
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|5108429|gb|AI740142.1|AI740142
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTCEST: gi|60354852|gb|DN221825.1|DN221825
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
EST: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATG ATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
genomic: TGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaat ... atctctctagATGAAGCTGCTGATTGACTGGAAAATCTGGATCGGACTTTTTCCAAATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGACCGCTACTGGAGGACAATCCAATTGTTCTTGGATCAATACGCTCCTGGAGTGCAGAATCATGATGCCAGCTTCAAAAGTGAAATTACCGAGGATGgtaatttaatgccttaatttattttttccccaaatttttgtcacttttatcgtgtttgcatctttttgcttttgagatggggctagtttatttttgaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG