1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatttatgaaatttcattctttccacagctatttatgatgaaagggaaacaaaataccattttctacgtactaaacctttgttgtttctaccgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
species | Zea mays |
transcript | GRMZM2G403915_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCG CCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAGEST: gi|211424049|gb|FL302150.1|FL302150
genomic: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCGgtaaacccat ... accgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
EST: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGTGCTTTGTCCG CCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAGEST: gi|211424048|gb|FL302149.1|FL302149
genomic: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCGgtaaacccat ... accgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
EST: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCG CCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAGEST: gi|33467439|gb|CF244488.1|CF244488
genomic: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCGgtaaacccat ... accgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
EST: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCG CCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGEST: gi|211421463|gb|FL302148.1|FL302148
genomic: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCGgtaaacccat ... accgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAG
EST: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCG CCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
genomic: CTCACCTTGCAGTACGGCGCCCAGCCCCTCATCTCCAAGCGCTTTGTCCGgtaaacccat ... accgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
ggaaacaaaataccattttctacgtactaaacctttgttgtttctaccgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
tactaaa putative branch site (score: 5)
tttctacc putative PPT
attttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttatgaaatttcattctttccacagctatttatgatgaaagggaaacaaaataccattttctacgtactaaacctttgttgtttctaccgctgcagCCAAGATACTATAGTGACTTCACTCGTTCTTGCAACGGAAGCAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - tttcatt
- - - - - - - - - - - -ccacagc
- - - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - -aaacaaa