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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTATTGATTGCAAGTACTTCGACTTTGGGACTGGCTCATGCCCCTTCGGAACAAGTTGTTTCTATAAGgtaggaatattgtcttttacatgctatgatatgtgaagtgaatgcagctgaacatactttgaggtctggagaccaagtttctttttggctaacatgattt...

Basic information

species Zea mays
transcript GRMZM2G395842_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G395842_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g21390.2 (Oryza sativa), 5'ss of exon 4
GTCTATTGATTGCAAGTACTTCGACTTTGGGACTGGCTCATGCCCCTTCGGAACAAGTTGTTTCTATAAGgtaggaatattgtcttttacatgctatga-tatgtgaagtgaatgcagctgaacatactttgaggtctggagaccaagtt---tctttttggctaacatgattt
||||||||| |||||||||||||| ||||| |||||  | || ||||| ||  |||| |||||||| ||||||| ||  |     |||||||||||| |  ||||||| | | |||  || ||  ||||||   | || |  | |||  |   |||   | |||| |  ||   
GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGGTCAAGCTGTTTCTACAAGgtagaaagctatatctttacatgctataaacatgtgaattcagtgctact-aatgtacttttgtggcttgtcatcaacataaatctcactagctatccaga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76020200|gb|DT947370.1|DT947370
EST:     TCGACTTTGGGACTGGCTCATGCCCCTTCGGAACAAGTTGTTTCTATAAG                         CATGCCTACAGAGATGGCCGCTTGGAAGAGGTAATACTGCGGCATCTTGAT
genomic: TCGACTTTGGGACTGGCTCATGCCCCTTCGGAACAAGTTGTTTCTATAAGgtaggaatat ... tgttttgcagCATGCCTACAGAGATGGCCGCTTGGAAGAGGTAATACTGCGGCATCTTGAT
EST: gi|67020621|gb|CO449370.1|CO449370
EST:     TCGACTTTGGGACTGGCTCATGCCCCTTCGGAACAAGTTGTTTCTATAAG                         CATGCCTACAGAGATGGCCGCTTGGAAGAGGTAATACTGCGGCATCTTGAT
genomic: TCGACTTTGGGACTGGCTCATGCCCCTTCGGAACAAGTTGTTTCTATAAGgtaggaatat ... tgttttgcagCATGCCTACAGAGATGGCCGCTTGGAAGAGGTAATACTGCGGCATCTTGAT