Sequence
atgc intronic sequence ATGC exonic sequence...ccatgactcatctttccttatcattggccatagttatttgatgtacatatcagcatatgttgttccaacactggttacaaatcacagtttgtttcaatagGCACTTCCTATTCCAACAATTGCTGTCATTGAAGGAGCTGTCCTTGGTGGTGGGCTAGAACTGGCTTTGGCATGCGATCTTCGAATATGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G388070_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g43710.1 (Oryza sativa), 3'ss of exon 3
---------------------------------------------ccatgactcatc---tttccttatcattggccatagttatttgatgtacatatca------gcatatgttgttccaacactggttacaaatcacagtttgtttcaatagGCACTTCCTATTCCAACAATTGCTGTCATTGAAGGAGCTGTCCTTGGTGGTGGGCTAGAACTGGCTTTGGCATGCGATCTTCGAATATGTG
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gtctgtatttattcagaatttacctttttttttgttggcatccaccctcgagtggaccagtgtttttatgagaaactatgcccattaatttcagatcctatacatggcgcatttttctttatgtgtatataaaaaccacatcttgttttttcagGCACTATCTATTCCAACAATTGCTGTCATTGAAGGAGCTGCTTTGGGTGGTGGGCTAGAACTGGCACTTTCATGCGACCTGCGTATATGTG
upper sequence: GRMZM2G388070_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G05200.1 (Glycine max), 3'ss of exon 3
---ccatgactcatctttccttatcattggccatagttatttgatgtacatatcagcatatgttgttcc--aacactggttacaaatcacagtttgtttcaatagGCACTTCCTATTCCAACAATTGCTGTCATTGAAGGAGCTGTCCTTGGTGGTGGGCTAGAACTGGCTTTGGCATGCGATCTTCGAATATGTG
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tattggtgatggaaaatttctaa--gtggattctaatc-tctgttttcctgttttattgatactgctccttgaaactagtataatattt--gtttctttattcagGCTGTCAATGTACCAACTATTGCTGTTATTGAAGGAGTAGCTCTTGGTGGTGGACTTGAAATGGCTCTTGCATGTGATATTCGAATATGTG
upper sequence: GRMZM2G388070_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0234g00080.t01 (Vitis vinifera), 3'ss of exon 3
ccatgactcatctttccttatcat-tggccatagttatttgatgtacatatcagcatatgttgttccaacactggttacaaatcaca---gtttgtttca-atagGCACTTCCTATTCCAACAATTGCTGTCATTGAAGGAGCTGTCCTTGGTGGTGGGCTAGAACTGGCTTTGGCATGCGATCTTCGAATATGTG
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----cattctatgttccttgtcggatgtctttatttctgtgcattccatgtgtctgccttctccttgaacatttgt-acaagcttcttatgtttattttgtacagGCACTCCATGTTCCTACTATTGCTGTTATTGAAGGAGCAGCACTGGGTGGTGGGCTAGAAATGGCTCTATCATGTGATCTTCGGATTTGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catatcagcatatgttgttccaacactggttacaaatcacagtttgtttcaatagGCACTTCCTATTCCAACAATTGCTGTCATTGAAGGAGCTGTCCTTGGTGGTGGGCTAGAACTGGCTTTGGCATGCGATCTTCGAATATGTG
tttgtttc CT-rich tract
ttacaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccatgactcatctttccttatcattggccatagttatttgatgtacatatcagcatatgttgttccaacactggttacaaatcacagtttgtttcaatagGCACTTCCTATTCCAACAATTGCTGTCATTGAAGGAGCTGTCCTTGGTGGTGGGCTAGAACTGGCTTTGGCATGCGATCTTCGAATATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
ccatgac
- - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaca