1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatgtgcatactttagtctctgtgcgcaaatctttgaatatatgggaatctgaccacagctactaattgtgggccctttatgatttaatattttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGGTTGAGAAAAGCTCTGATCTGAGTGCTGCTTCTCAG
species | Zea mays |
transcript | GRMZM2G387076_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGEST: gi|211529456|gb|FL249093.1|FL249093
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTG
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTTGAGAGTGTCCEST: gi|211460687|gb|FL127589.1|FL127589
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATT-GAGAGTGTCC
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAARACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGEST: gi|211529460|gb|FL249097.1|FL249097
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTG
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGEST: gi|60354098|gb|DN221071.1|DN221071
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTG
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGEST: gi|149057998|gb|EE156679.2|EE156679
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTG
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGEST: gi|211529454|gb|FL249091.1|FL249091
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTG
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGEST: gi|44681914|gb|CK786962.1|CK786962
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAG
EST: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTA CATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTG
genomic: ACAAATTAATGAAAATTCAGAGGGACTTGGATGAAACAAAAATTATCCTAgtaagtgtga ... attttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTG
ggaatctgaccacagctactaattgtgggccctttatgatttaatattttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGGTTGAGAAAAGCTCTGATCTGAGTGCTGCTTCTCAG
tttatgatttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgtgcatactttagtctctgtgcgcaaatctttgaatatatgggaatctgaccacagctactaattgtgggccctttatgatttaatattttaacagCATAAAACTATTGAGAGTGTCCTTGCCAGAGGAGAGAGATTGGATAGCTTGGTTGAGAAAAGCTCTGATCTGAGTGCTGCTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagctac