Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCCCCCTAGGAGTGTCACAAGTTGACGATGGGCTAAATTTTGCAATATTCTCACAGCATGCTTCTTCTGTCACCCTTTGCTTGAAACTTCCTGAGAGgtaacattttatctcttaaaactatgttgtgatgttgaacgtgtgtagtttcttggccaccttggaattataatcttttccattccaattttaattagca...

Basic information

species Zea mays
transcript GRMZM2G385578_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G385578_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g29404.1 (Oryza sativa), 5'ss of exon 4
CTTTCCCCCTAGGAGTGTCACAAGTTGACGATGGGCTAAATTTTGCAATATTCTCACAGCATGCTTCTTCTGTCACCCTTTGCTTGAAACTTCCTGAGAGgtaacattttatct---cttaaaactatgttgtgatgttgaacgtgtgtagtttcttggccacct-tggaattataa--tcttttccattccaattttaattagca
| |||||  |||||||||| |||||||| |  ||||| || || ||| | ||||| |||||||||||||||||||  || ||||| || ||||||| ||||||    |||| ||   | |||||||  |||||||  ||    || | |  |||  ||   |  | || |  | |    |||  ||  ||  | | | || |    
CCTTCCCATTAGGAGTGTCTCAAGTTGAAGGCGGGCTGAACTTCGCACTTTTCTCTCAGCATGCTTCTTCTGTCATTCTCTGCTTAAAGCTTCCTGGGAGgtatagctttaccttttcctaaaact--gttgtgaccttactggtttttctttttctgattatatgtgtacctgtgggttctggtctcttaaagtctcaact----