1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAGGAAGATTCTTCTGATGGTGATGGTACTAAAGAGGACTATGTTCATATCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGAgtaaatttctcttataataagtaactaccagttaagtttgctttattatctttaacacagttgaagttaatgaaactgcag
species | Zea mays |
transcript | GRMZM2G385543_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGA CTGAGGAGAAAGAAGATAAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTTEST: gi|160481403|gb|EY254527.1|EY254527
genomic: TCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGAgtaaatttct ... gaaactgcagCTGAGGAGAAAGAAGATAAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTT
EST: TCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGA CTGAGGAGAAAGAAGATAAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTTEST: gi|29167960|gb|CB411220.1|CB411220
genomic: TCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGAgtaaatttct ... gaaactgcagCTGAGGAGAAAGAAGATAAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTT
EST: TCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGA CTGAGGAGAAAGAAGATAAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTT
genomic: TCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGAgtaaatttct ... gaaactgcagCTGAGGAGAAAGAAGATAAGTGAGAGGATGAAGCTTCTTCAAGATCTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGAAGATTCTTCTGATGGTGATGGTACTAAAGAGGACTATGTTCATATCCGGGCAAAGCGAGGCCAAGCCACTAACAGCCACAGCCTTGCAGAAAGAgtaaatttctcttataataagtaactaccagttaagtttgctttattatctttaacacagttgaagttaatgaaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG