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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagccatctgcaggtatcaatgtttgacttgctcctaagtttccagtgctttttcttcatcatgcttctatttttactgacagccatgtgctattgttctacagAAACACCGTATAGTTCAACATCGTTCTG

Basic information

species Zea mays
transcript GRMZM2G379167_T01
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcttcatcatgcttctatttttactgacagccatgtgctattgttctacagAAACACCGTATAGTTCAACATCGTTCTG
                         tactgac  putative branch site (score: 1)
                                            ttgttct  putative PPT
                ttctattttta  TA-rich tract