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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattgatgtagttttgtatgacattctccctaccagtcatgcttaggagttcaggaccaaccttaattattttctattcagACTATAAAGATCCATCACCATCCAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGAT

Basic information

species Zea mays
transcript GRMZM2G370741_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 3'ss of exon 8
gtaagttattgatgtagttttgtatgacattctccctaccagtcatgcttaggagttcaggaccaaccttaattattttctattcagACTATAAAGATCCATCACCATCCAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGAT
|| ||||||  ||||  | |    |  |||| | |  |  |  ||||  ||||| || |      ||| |  |  |||  | | |||  ||||| ||||||   || ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
gtgagttatgcatgttttctgtcttagcattattctcattaaccatggataggattttac-----accattttcctttcatgtacagGATATAAGGATCCAGAGCCTTCCAAGGCAAACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTTGATCGATACATATGGATTATTGGAATGAT

upper sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G25780.1 (Glycine max), 3'ss of exon 9
------gtaagttattgat--gtagttttgtatgacattctccctaccagtcatgcttaggagttcaggaccaac-cttaattat--tttctatt---cagACTATAAAGATCCATCACCATCCAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGAT------
      ||| ||  |   |  | | |||| ||    |||  |      |  | | | | |  ||| ||  | ||  | ||||| |  ||| |||    |||  ||||  |||||  ||      ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| || || |||||||||||      
gcttttgtatgtagtctgtttgcaattttctagttgatttgctaatataagcttacat-gctgtttagtgcaaatgcataattgtaatttttatgtggcagGTTATACTGATCCTGCA------AAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGC

upper sequence: GRMZM2G370741_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G08730.1 (Glycine max), 3'ss of exon 9
------gtaagttattgat--gtagttttgtatgacattctccctaccagtcatgcttaggagttcaggaccaac-cttaattat--tttctatt---cagACTATAAAGATCCATCACCATCCAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGAT------
      ||| ||| |   |  | | |||| ||    |||  |      |  | | | | |  ||| |   | ||  | ||||| |  ||| |||    |||  ||||  |||||  ||      ||| |  |  | || |   | ||||||||||||||| ||||||| || ||||| ||||| || || |||||||||||      
gcttttgtatgttgtctgtttgcaattttctagttgatttgctaatataagcttacat-gctgtttactgcaaatgcataattgtaatttttatgtggcagGTTATACTGATCCTGCA------AAGCCTGATCTCCCTCGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCGCTACATCTGGATAATTGGAATGATTTATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctaccagtcatgcttaggagttcaggaccaaccttaattattttctattcagACTATAAAGATCCATCACCATCCAAGGCACACTTACCCCTGCTACATGAGTGGCATTTCCGATCTGGCCTCGATCGATACATATGTATTATTGGAATGAT
                                  ccttaat  putative branch site (score: 4)
                                           ttttctattc  putative PPT
                                    ttaattattttctatt  TA-rich tract