Sequence
atgc intronic sequence ATGC exonic sequence...gatcatgtgcacacgtacatacacctctattcctgccatgtgatcggcatgtgccgtgttctaatgagtacgcgcacgtgcgccacattttttggtgtagGCGGCGGCGGCGGCCTCGGCCTCTGTGGCCGTGGGATCCCATGGTGTGGCAGCAGCTGGGATGGCAGACTTCGTAGGCAACGCAGTGCCCAATAATTGCA
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggcatgtgccgtgttctaatgagtacgcgcacgtgcgccacattttttggtgtagGCGGCGGCGGCGGCCTCGGCCTCTGTGGCCGTGGGATCCCATGGTGTGGCAGCAGCTGGGATGGCAGACTTCGTAGGCAACGCAGTGCCCAATAATTGCA
ttctaat putative branch site (score: 2)
catttttt putative PPT
acatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatcatgtgcacacgtacatacacctctattcctgccatgtgatcggcatgtgccgtgttctaatgagtacgcgcacgtgcgccacattttttggtgtagGCGGCGGCGGCGGCCTCGGCCTCTGTGGCCGTGGGATCCCATGGTGTGGCAGCAGCTGGGATGGCAGACTTCGTAGGCAACGCAGTGCCCAATAATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- -catgtgc
- - - - - - - - -catacac
- - - - - - - - - - - - - - - tcctgcc
- - - - - - - - - - - - - - - - - - - - - - cggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgtgc