1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGTCGTCCTTCCAACGCAGCCCAGGTTTAGCTGGTACCAAGCATTCCTGGCTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctcatctctgaatgttcgcaatccttcctgcacactaactggggtgtctttatttccatgttag
species | Zea mays |
transcript | GRMZM2G363460_T06 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAAEST: gi|148946560|gb|EC885619.2|EC885619
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAAEST: gi|149085990|gb|EE175517.2|EE175517
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAAEST: gi|148947997|gb|EC893497.2|EC893497
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAAEST: gi|148941345|gb|EC886254.2|EC886254
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAAEST: gi|148980471|gb|EE027160.2|EE027160
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAAEST: gi|78109256|gb|DV527672.1|DV527672
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAAEST: gi|31355282|gb|CD439639.1|CD439639
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCACAATGTTGTAGCAGAAEST: gi|211092253|gb|FL379378.1|FL379378
genomic: CGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGGTGTAGCAGAAEST: gi|76913179|gb|DV165031.1|DV165031
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
EST: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAG AAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
genomic: CTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctca ... tccatgttagAAACTGTTCCTTCCTAGGCTCAAGTCTTGGATCCGCAATGTTGTAGCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCGTCCTTCCAACGCAGCCCAGGTTTAGCTGGTACCAAGCATTCCTGGCTGCAGGGCTCTTGCTTGGTTTTGGTGCTAGCGCTGCTGTCTTTATCAAGgtatttctcatctctgaatgttcgcaatccttcctgcacactaactggggtgtctttatttccatgttag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT