1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagtgttcaaaatttatgtgctgtttcatggttcagtgtttagctctgttatccaaagcgagccaccctgtgctgcgtaaatattagtaattttgacccaacatctatgaaaatcttacaacatagaccatttgtttggttgtgattccagGGGCAATTAACAGTTCATGGAGAGCCTCTCAG
species | Zea mays |
transcript | GRMZM2G363460_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAGTACCGCCCACTGGAAGACCATGCCCCTACTGTTATAAGGAATG GGGCAATTAACAGTTCATGGAGAGCCTCTCAGEST: gi|20300876|gb|BQ163819.1|BQ163819
genomic: TTCTCAGTACCGCCCACTGGAAGACCATGCCCCTACTGTTATAAGGAATGgtcagtgttc ... gtgattccagGGGCAATTAACAGTTCATGGAGAGCCTCTCAG
EST: TTCTCAGTACCGCCCACTGGAAGACCATGCCCCTACTGTTATAAGGAATG GGGCAATTAACAGNTCATGGAGAGCCTCTCAGEST: gi|31355282|gb|CD439639.1|CD439639
genomic: TTCTCAGTACCGCCCACTGGAAGACCATGCCCCTACTGTTATAAGGAATGgtcagtgttc ... gtgattccagGGGCAATTAACAGTTCATGGAGAGCCTCTCAG
EST: TTCTCAGTACCGCCCACTGGAAGACCATGCCCCTACTGTTATAAGGAATG GGGCAATTAACAGTTCATGGAGAGCCTCTCAG
genomic: TTCTCAGTACCGCCCACTGGAAGACCATGCCCCTACTGTTATAAGGAATGgtcagtgttc ... gtgattccagGGGCAATTAACAGTTCATGGAGAGCCTCTCAG
cccaacatctatgaaaatcttacaacatagaccatttgtttggttgtgattccagGGGCAATTAACAGTTCATGGAGAGCCTCTCAG
atcttac putative branch site (score: 115)
tatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgttcaaaatttatgtgctgtttcatggttcagtgtttagctctgttatccaaagcgagccaccctgtgctgcgtaaatattagtaattttgacccaacatctatgaaaatcttacaacatagaccatttgtttggttgtgattccagGGGCAATTAACAGTTCATGGAGAGCCTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA