1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGATTGATGATGAAACGGCTGATGCTGTAAAGGCTTCTGCTTCGGCTGTTTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatctctaccgtccgtttcgctgcttctttcttgccaatggttcaactcactccaataatgtcattctgtttttgttagcag
species | Zea mays |
transcript | GRMZM2G363460_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGGEST: gi|20300876|gb|BQ163819.1|BQ163819
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGGEST: gi|148941345|gb|EC886254.2|EC886254
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACANCA-GCTCTAGATTCCCAAGCCAAGEST: gi|74242480|gb|DT650394.1|DT650394
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACA-CAAGCTCTAGATTCCCAAGCCAAG
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG CEST: gi|74242480|gb|DT650394.1|DT650394
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG CEST: gi|31355282|gb|CD439639.1|CD439639
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG CEST: gi|31355282|gb|CD439639.1|CD439639
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG CEST: gi|149085990|gb|EE175517.2|EE175517
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGGEST: gi|76912800|gb|DV164886.1|DV164886
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGGEST: gi|31354170|gb|CD438527.1|CD438527
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGGEST: gi|71442954|gb|DR824004.1|DR824004
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTEST: gi|148999595|gb|EE036575.2|EE036575
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCT
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGC-AAGGEST: gi|71312718|gb|DR792887.1|DR792887
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: TTCTGCTATTGCCAAAACAAAACAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACEST: gi|76913179|gb|DV165031.1|DV165031
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGAC
EST: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCTCAAGCCAAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGATTGATGATGAAACGGCTGATGCTGTAAAGGCTTCTGCTTCGGCTGTTTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatctctaccgtccgtttcgctgcttctttcttgccaatggttcaactcactccaataatgtcattctgtttttgttagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG