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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgaaaatacatcctccttggtcttcatccatgctcgtgcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG

Basic information

species Zea mays
transcript GRMZM2G363460_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148941345|gb|EC886254.2|EC886254
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|33468109|gb|CF245158.1|CF245158
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|149085990|gb|EE175517.2|EE175517
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148946560|gb|EC885619.2|EC885619
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|76913179|gb|DV165031.1|DV165031
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148971702|gb|EE022431.2|EE022431
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
            atcttac  putative branch site (score: 3)
          ttatctta  TA-rich tract